Package: ZIBR 1.0.2.9000
Charlie Bushman
ZIBR: A Zero-Inflated Beta Random Effect Model
A two-part zero-inflated Beta regression model with random effects (ZIBR) for testing the association between microbial abundance and clinical covariates for longitudinal microbiome data. Eric Z. Chen and Hongzhe Li (2016) <doi:10.1093/bioinformatics/btw308>.
Authors:
ZIBR_1.0.2.9000.tar.gz
ZIBR_1.0.2.9000.zip(r-4.5)ZIBR_1.0.2.9000.zip(r-4.4)ZIBR_1.0.2.9000.zip(r-4.3)
ZIBR_1.0.2.9000.tgz(r-4.4-any)ZIBR_1.0.2.9000.tgz(r-4.3-any)
ZIBR_1.0.2.9000.tar.gz(r-4.5-noble)ZIBR_1.0.2.9000.tar.gz(r-4.4-noble)
ZIBR_1.0.2.9000.tgz(r-4.4-emscripten)ZIBR_1.0.2.9000.tgz(r-4.3-emscripten)
ZIBR.pdf |ZIBR.html✨
ZIBR/json (API)
NEWS
| # Install 'ZIBR' in R: |
| install.packages('ZIBR', repos = c('https://pennchopmicrobiomeprogram.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/pennchopmicrobiomeprogram/zibr/issues
- ibd - Longitudinal human microbiome data
Last updated 11 months agofrom:3a93a4dac5. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 14 2024 |
| R-4.5-win | OK | Sep 14 2024 |
| R-4.5-linux | OK | Sep 14 2024 |
| R-4.4-win | OK | Sep 14 2024 |
| R-4.4-mac | OK | Sep 14 2024 |
| R-4.3-win | OK | Sep 14 2024 |
| R-4.3-mac | OK | Sep 14 2024 |
Exports:simulate_zero_inflated_beta_random_effect_datazibr
Dependencies:statmod
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Fit beta random effect | fit_beta_random_effect |
| Fit logisitic random effect | fit_logistic_random_effect |
| Fit zero inflated beta random effect | fit_zero_inflated_beta_random_effect |
| Longitudinal human microbiome data | ibd |
| Simulate beta data | simulate_beta_random_effect_data |
| Simulate logistic data | simulate_logistic_data |
| Simulate data according to zero-inflated beta random effects model | simulate_zero_inflated_beta_random_effect_data |
| Fit zero-inflated beta regression with random effects | zibr |
